Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs10198681 chr2:178793793 T/C 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs10198877 chr2:178794039 T/G 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs10201150 chr2:178788069 A/C 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs10201731 chr2:178794619 T/G 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs10202295 chr2:232084411 T/G 7.83E-5 484 32.23 28.78 31.13 KM Plot
PRAD rs10202813 chr2:103019740 A/C 0.000153 494 26.18 30.12 32 KM Plot
PRAD rs10208501 chr2:178783330 C/T 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs10211341 chr2:178783749 G/A 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs10221783 chr2:178772345 A/C 3.83E-5 494 20.48 35.33 30.33 KM Plot
PRAD rs10227931 chr7:135084601 C/T 1.74E-9 493 30.8 31.9 3.03 KM Plot
PRAD rs10235488 chr7:135181037 C/T 1.88E-9 492 30.53 32.63 3.03 KM Plot
PRAD rs10238568 chr7:135122039 G/C 2.02E-9 492 30.77 32.4 3.03 KM Plot
PRAD rs10239457 chr7:135116926 A/G 2.34E-10 494 2.33 31.1 30.9 KM Plot
PRAD rs10243569 chr7:135063466 G/A 1.95E-9 491 30.8 31.9 3.03 KM Plot
PRAD rs10251162 chr7:135190264 C/T 2.02E-9 488 30.77 32.52 8.75 KM Plot